PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57269.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 188aa    MW: 20413.5 Da    PI: 6.0866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57269.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-0611521055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  + RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  MLOC_57269.4 11 QVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINYVQSLQ 52
                  67******************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.318151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-4757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-131168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.63E-71356No hitNo description
Gene3DG3DSA:4.10.280.105.4E-131465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MHSLILVRMV QVRRERISER MRYLQELVPG CDKVTGKAGM LDEIINYVQS LQKQVEFLSM  60
KIAAANPVVN FNIVDDLFGG RRMSQPCGPA AALPAMTLPM HHGQLDPSCL QMSNTAMQQM  120
QQPAAGFGLD MVLNHPYPLR SAAATPASAS AATSVESCLD VNGAAAWDIA SQNLFSGFDA  180
QFQSVQSE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3602380.0AK360238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1113K05.
GenBankAK3606200.0AK360620.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570191.12e-87PREDICTED: transcription factor bHLH63
SwissprotQ8GY615e-31BH063_ARATH; Transcription factor bHLH63
TrEMBLM0X5U71e-139M0X5U7_HORVD; Uncharacterized protein
STRINGMLOC_57269.21e-126(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.18e-32cryptochrome-interacting basic-helix-loop-helix 1